1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatcctccctaacctctcatcctcgctaatatctttcaccgaactactttgccctttggtatgtatgatgtgttttgctaacaagtttatcttttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCTGACCATGAGGCTGTCATTGCAAGAATTCAGATCAGCATAAAAAATTGCT
species | Zea mays |
transcript | GRMZM2G038667_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACNNNNNNNTGCTEST: gi|6973544|gb|AW438280.1|AW438280
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAA-TGCTEST: gi|6021566|gb|AW066494.1|AW066494
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAA-TGCTEST: gi|148948172|gb|EC893687.2|EC893687
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTTTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACNNNNNNNTGCTEST: gi|84970328|gb|DW468678.1|DW468678
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTTTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACNNNNNNNTGCTEST: gi|71767671|gb|DR965608.1|DR965608
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACNNNNNNNTGCTEST: gi|211525354|gb|FL435359.1|FL435359
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
EST: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATG TTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACNNNNNNNTGCT
genomic: TGGCCGGACGAAATATGACTTCTGAACTTTTGGGTTAAAACTGACACATGgtatcctccc ... ttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCT
ttgccctttggtatgtatgatgtgttttgctaacaagtttatcttttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCTGACCATGAGGCTGTCATTGCAAGAATTCAGATCAGCATAAAAAATTGCT
tgctaac putative branch site (score: 1)
tttatcttttccttac putative PPT
tttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctccctaacctctcatcctcgctaatatctttcaccgaactactttgccctttggtatgtatgatgtgttttgctaacaagtttatcttttccttacagTTGATACTGTTCAAAGCTGTTGTATGTTCAAGTATAGTACAAAAAAATGCTGACCATGAGGCTGTCATTGCAAGAATTCAGATCAGCATAAAAAATTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA