1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgttaatgagctagttccatatccttcgattgtagtttaagctttagttgcatgttgttgagttagttgctacggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
species | Zea mays |
transcript | GRMZM2G037698_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCCAATCEST: gi|148956938|gb|EC902874.2|EC902874
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|148987120|gb|EE030948.2|EE030948
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAA GTTCCCTC-AACTCTGGGCAC-ATTAGATGCAEST: gi|60397274|gb|DN230090.1|DN230090
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCC-TCCAACTCTGG-CACCATTAGATGCA
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGAEST: gi|148940045|gb|EC884788.2|EC884788
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGA
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|31355564|gb|CD439921.1|CD439921
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|211125238|gb|FL005611.1|FL005611
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|31354887|gb|CD439244.1|CD439244
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCTCCAACTCTGGCCCCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|149095787|gb|EE181433.2|EE181433
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGATAAGACAG GTTCCTCCCACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCEST: gi|148958621|gb|EC904872.2|EC904872
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG GTTCCCTCCA-CTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAAT
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCC-TCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAAT
agttgcatgttgttgagttagttgctacggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
ttgcttctgttttctc CT-rich tract
agtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttaatgagctagttccatatccttcgattgtagtttaagctttagttgcatgttgttgagttagttgctacggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgct