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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttaatgagctagttccatatccttcgattgtagtttaagctttagttgcatgttgttgagttagttgctacggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG

Basic information

species Zea mays
transcript GRMZM2G037698_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037698_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 5
-------------------------------------------------------------------------------tgttaatga-gctagttccatatccttcgattgtagtt-taagctttagttgc-atgttgttgagttagtt--gctacggagtaa---ttgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
                                                                               | | ||  | ||||| ||      |   ||   || || | ||  || ||||| || ||      ||| ||  |  | |   |||   ||   |   ||||||| ||||||||||||||| ||||| || | |||||| | |||||||| || || |||||||| ||||| ||||| |||||||||||||||||||| || || ||||
gtacatatctgtattcatagttatgctacaaacaaggtctaaaacatgcattaatgtttttatccaatagttaagattatctcaagaatgctagctcatctcgccaggacattatttctcagtgtttgttgccatctttacaccttacttttgaaatgagataacagttctctacattttctcacagGTTCCTCCAACTTTGGCATCAATTGATGCAATTGAGAGATATACCCAGATCTCCAGTCATCCACTTCACAAGACAAACAAACCAGGCATCTTATCTATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31350321|gb|CD434678.1|CD434678
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCCAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|148956938|gb|EC902874.2|EC902874
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|148987120|gb|EE030948.2|EE030948
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAA                         GTTCCCTC-AACTCTGGGCAC-ATTAGATGCA
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCC-TCCAACTCTGG-CACCATTAGATGCA
EST: gi|60397274|gb|DN230090.1|DN230090
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGA
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGA
EST: gi|148940045|gb|EC884788.2|EC884788
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|31355564|gb|CD439921.1|CD439921
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|211125238|gb|FL005611.1|FL005611
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|31354887|gb|CD439244.1|CD439244
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCTCCAACTCTGGCCCCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|149095787|gb|EE181433.2|EE181433
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGATAAGACAG                         GTTCCTCCCACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATC
EST: gi|148958621|gb|EC904872.2|EC904872
EST:     AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAG                         GTTCCCTCCA-CTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAAT
genomic: AACTTACAGAGTGTAATACCATGCTTTCAGCACAGCGTAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCC-TCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcatgttgttgagttagttgctacggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCATTAGATGCACTCGAGAGATACACTCAAATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
                                   ttgcttctgttttctc  CT-rich tract
                              agtaatt  TA-rich tract