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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaactgtattggtcaacactgatttgacactatttgtaggtgttctatactgtgcatcttgtcaccttaacttttcatgtttaacttttctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTCCTAGCTCTCATTGTTTCTTTTCTGTTACCATCTTCAAAAGTCCTCGCTA

Basic information

species Zea mays
transcript GRMZM2G037624_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456247|gb|CA827830.1|CA827830
EST:     ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTAT                         ACGAGCGAAAGATCCTCTCTGATCTGCATTGTGGCTGATGACAGCGTGTTC
genomic: ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTATgtaagtaatc ... ctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTC
EST: gi|6022628|gb|AW067440.1|AW067440
EST:     TGATAAGTGTAATCAGGAATTAT                         ACGAGCGAAAGATCCTCTCTGATCTGCATTGTGGCTGATGACAGCGTGTTC
genomic: TGATAAGTGTAATCAGGAATTATgtaagtaatc ... ctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTC
EST: gi|71449425|gb|DR830475.1|DR830475
EST:     ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTAT                         ACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTC
genomic: ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTATgtaagtaatc ... ctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTC
EST: gi|20208307|gb|BQ134396.1|BQ134396
EST:     ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTAT                         ACGAGCGAAAGATCCTCTCTGATCTGCATTGTGGCTGATGACAGCGTGTTC
genomic: ATGGTGATAAAGTTTGGAGATCAGCGTTGATAAGTGTAATCAGGAATTATgtaagtaatc ... ctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatactgtgcatcttgtcaccttaacttttcatgtttaacttttctctgcccagACGAGCGAAAGATCCTCTCCGATCTGCATTGTGGCTGATGACAGCGTGTTCCTAGCTCTCATTGTTTCTTTTCTGTTACCATCTTCAAAAGTCCTCGCTA
                                  gtttaac  putative branch site (score: 3)
                                        cttttctctgccc  CT-rich tract
                                   tttaactttt  TA-rich tract