1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactttgagccttcaattttatttttcatcaacatactgctgccgacaatgattattttttattcgtattagttctgatagGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGGTCACACGCA
species | Zea mays |
transcript | GRMZM2G036837_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGTTCTGATAGEST: gi|18174267|gb|BM349655.1|BM349655
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTG--ACA---C----AGgtactttgag ... gt
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAG GCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGG
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGgtactttgag ... gttctgatagGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGG
catcaacatactgctgccgacaatgattattttttattcgtattagttctgatagGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGGTCACACGCA
aatgattattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgagccttcaattttatttttcatcaacatactgctgccgacaatgattattttttattcgtattagttctgatagGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGGTCACACGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA