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gtactttgagccttcaattttatttttcatcaacatactgctgccgacaatgattattttttattcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGG
species | Zea mays |
transcript | GRMZM2G036837_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAG TTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTEST: gi|18174267|gb|BM349655.1|BM349655
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGgtactttgag ... ttcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCT
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTG--ACA- --C----AGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTEST: gi|60359553|gb|DN226526.1|DN226526
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGgtactttgag ... ttcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCT
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAG TTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTEST: gi|6194610|gb|AW146714.1|AW146714
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGgtactttgag ... ttcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCT
EST: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAG TTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCT
genomic: AGCTGGTGGGAGTGATCCTCTCATCATAAATTTTCTATCACTTGACACAGgtactttgag ... ttcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCT
tttatttttcatcaacatactgctgccgacaatgattattttttattcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGG
ttttttattc CT-rich tract
aatgattattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgagccttcaattttatttttcatcaacatactgctgccgacaatgattattttttattcgtattagTTCTGATAGGCCTCTCCAATGTGAATAAGCTGTGGTCTCTGTAGAGAAGCTGCGGCGAGGGTGGGTTTCTTTACCATCAGAATAAGAGAGCATTGATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA