1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaaatgctcaccagtcaccatttacatgaaatttgcttttgactgctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
species | Zea mays |
transcript | GRMZM2G035595_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211246948|gb|FL479530.1|FL479530
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211541587|gb|FL476015.1|FL476015
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211025730|gb|FL435838.1|FL435838
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
gctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
cctttcctgatctttt CT-rich tract
aaactaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatgctcaccagtcaccatttacatgaaatttgcttttgactgctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -aatgctc
- - - - - - - gtcacca
- - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - - - - - - tgactgc
- - - - - - - - - - - - - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa