1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaaatgctcaccagtcaccatttacatgaaatttgcttttgactgctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
species | Zea mays |
transcript | GRMZM2G035595_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211142481|gb|FL118078.1|FL118078
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|71441274|gb|DR822324.1|DR822324
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCCCCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTTTAGTGAAAATGGTCAATGAAGCTAGTGCAACCCTTCCTCGGTGGEST: gi|4776320|gb|AI665323.1|AI665323
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211541587|gb|FL476015.1|FL476015
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211025730|gb|FL435838.1|FL435838
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211246948|gb|FL479530.1|FL479530
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|78027261|gb|DV495648.1|DV495648
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|71759438|gb|DR957375.1|DR957375
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|86472181|gb|DY238551.1|DY238551
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|149009585|gb|EE154018.2|EE154018
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTTTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|5928615|gb|AW056012.1|AW056012
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|5816276|gb|AI987192.1|AI987192
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CCCCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|84970100|gb|DV171467.2|DV171467
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGEST: gi|211142480|gb|FL118077.1|FL118077
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
EST: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTG GTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
genomic: CACCACCAAGAAATCTTACATTGCCCCCTCCTGGAGTACCAGAAAGTGTGgtaagtgtat ... ctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGG
gctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
cctttcctgatctttt CT-rich tract
aaactaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatgctcaccagtcaccatttacatgaaatttgcttttgactgctaatgcacttgacaaactaaaatctggcctttcctgatcttttctcaatgcagGTTACTCTAGTGAAAATGGTCAATGAAGCTAGTGCAAACCTTCCTCGGTGGGATGATGGAATATAAACTTTGGATGATGTCAATTATATCTTAGGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA