1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagagctcctcatttattttgattgctatcacactttaatgatgacttaaaagtctttaggaacaatccttaggaagtcctttctctttttaatagaagtaatcttttttacatgatttatatattatgcttaatatgtgtctatttgatcaatgccgatagGATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAGGTCTCCTATGCCAGGCCATACTCTTTGAGATGTTTACAAAAAGGAGGAA
species | Zea mays |
transcript | GRMZM2G033671_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACGGATGGCACATGACTGAAGATGATGAAAGTAGCTGTGCATGTTTTGAG GATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAGEST: gi|60342249|gb|DN209222.1|DN209222
genomic: ACGGATGGCACATGACTGAAGATGATGAAAGTAGCTGTGCATGTTTTGAGgtaagagctc ... atgccgatagGATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAG
EST: ACGGATGGCACATGACTGAAGATGATGAAAGTAGCTGTGCATGTTTTGAG GATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAG
genomic: ACGGATGGCACATGACTGAAGATGATGAAAGTAGCTGTGCATGTTTTGAGgtaagagctc ... atgccgatagGATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAG
tttacatgatttatatattatgcttaatatgtgtctatttgatcaatgccgatagGATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAGGTCTCCTATGCCAGGCCATACTCTTTGAGATGTTTACAAAAAGGAGGAA
atgatttatatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagctcctcatttattttgattgctatcacactttaatgatgacttaaaagtctttaggaacaatccttaggaagtcctttctctttttaatagaagtaatcttttttacatgatttatatattatgcttaatatgtgtctatttgatcaatgccgatagGATGAGCACTGTTTGGTACCTGTTCTGAACCCAGGCTTTTCATGGATTGAGGTCTCCTATGCCAGGCCATACTCTTTGAGATGTTTACAAAAAGGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA