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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcacattacatgtacagttataggtgcaccaagccatttcttgctgtatctagtaaagaacgctgtgtaaaaatgcaaccaagcagcagcataatataaattgtgactgttttacttttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCTACAAATATGTTGGAAAGCATGATTGACCATCCTACTCCCACTAGGGCAG

Basic information

species Zea mays
transcript GRMZM2G033526_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133857|gb|BQ833942.1|BQ833942
EST:     TGGAGACCTTGNG-GCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: TGGAGACCTTG-GTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|32858382|gb|CD998063.1|CD998063
EST:     GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGGCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|22542067|gb|BU092505.1|BU092505
EST:     G-GGAGACCTTGG-GCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|87155458|gb|DY400247.1|DY400247
EST:     GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|60341691|gb|DN208664.1|DN208664
EST:     GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|67016939|gb|CO445688.1|CO445688
EST:     GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|20208070|gb|BQ134159.1|BQ134159
EST:     TGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: TGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT
EST: gi|67022089|gb|CO450838.1|CO450838
EST:     GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAG                         GCAGAGATTGTCCAAACATGTCGAAGCATGGAGAAACCAGTCATTGTCGCT
genomic: GTGGAGACCTTGGTGCTGAACTTCCGATTGAGGATGTTCCTTTGCTACAGgtgagatcac ... tttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcaaccaagcagcagcataatataaattgtgactgttttacttttttttcagGCAGAGATTGTCCAAACATGTCGAAGTATGGAGAAACCAGTCATTGTCGCTACAAATATGTTGGAAAGCATGATTGACCATCCTACTCCCACTAGGGCAG
                                   ctgttttacttttttt  CT-rich tract
                   ataatataaattgtga  TA-rich tract