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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttcctctcctccatatgcacagttccattatatttgctttgcgaacgtggtagcgccacaattcctaaagtaaatgttacattgatagatatggaggttgccgtctgtaggttgattattgacttgtttatttctttgtttttttttatgattgtgatttcttatcctgatgtttgattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA

Basic information

species Zea mays
transcript GRMZM2G032505_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 9
gtgagccttcctctcctccatatgcacagttccattatatttgctttgcgaacgtggtagcgccacaattcctaaagtaaatgttacattgatagatatggaggttgccgtctgtaggttgattattgacttgtttatttctttgtttttttttatgattgtgatttcttatcctgatgtttgattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTT-TGTCAAAACATATGGA
                                                                                              | ||    | ||| | |   ||| |    ||||   |      | |  || | ||  |   |  ||||| ||||||||||||||  ||  |||| ||||| ||||| ||||| ||||| ||||| ||  ||||||| ||||| ||||| ||||| ||| | || || || ||||||   | | ||  | ||      | 
--------------------------------------------------------------------------------------------gtgttaatctgcttggcattgttagataagctatttgttaccaactctaattatgttgataactacttgtggtttcttatcctgatcgtttcttgcgcagGTGACTCATGAGGACTTCAACGAAGGCATAATACAGGTGCAGGCTAAGAAGAAGTCTAGCCTAAATTATTACGCTTAACAAGCTATGCTAGAATCATCAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40335877|gb|CK369947.1|CK369947
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|21809843|gb|BQ668161.1|BQ668161
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCGCGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|15589970|gb|BI674586.1|BI674586
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149101526|gb|EE187649.2|EE187649
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|32932292|gb|CF037104.1|CF037104
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTAC
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTAC
EST: gi|6828072|gb|AW331715.1|AW331715
EST:     CAGNTTGNGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTNAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60349052|gb|DN216025.1|DN216025
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|40303137|gb|CK347524.1|CK347524
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|211211385|gb|FL017117.1|FL017117
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|67025949|gb|CO454698.1|CO454698
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACTAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|91878259|gb|EB408216.1|EB408216
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|37387668|gb|CF631032.1|CF631032
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60343601|gb|DN210574.1|DN210574
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60399057|gb|DN231873.1|DN231873
EST:     CAGTTTGCGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|76288480|gb|DV028048.1|DV028048
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|6227044|gb|AW155748.1|AW155748
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCNCGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149077126|gb|EE165786.2|EE165786
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60348868|gb|DN215841.1|DN215841
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|32931353|gb|CF036165.1|CF036165
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGT
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGT
EST: gi|60341549|gb|DN208522.1|DN208522
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|22935344|gb|BU571619.1|BU571619
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|22473220|gb|BU037700.1|BU037700
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149027737|gb|EE154581.2|EE154581
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|211112761|gb|FL481602.1|FL481602
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60398226|gb|DN231042.1|DN231042
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|113802401|gb|DW925766.1|DW925766
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTAC
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTAC
EST: gi|15590428|gb|BI675044.1|BI675044
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149096588|gb|EE182347.2|EE182347
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|148979720|gb|EE026793.2|EE026793
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|211292080|gb|FL259237.1|FL259237
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCC-TACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAR
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|23512613|gb|BU672752.1|BU672752
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCCCGAGGATTTCAATGAAGGGATCGTACAGGTCCCGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60397037|gb|DN229856.1|DN229856
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60340215|gb|DN207188.1|DN207188
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|40335237|gb|CK369307.1|CK369307
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60357103|gb|DN224076.1|DN224076
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|45847085|gb|CN071028.1|CN071028
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|74241693|gb|DT649607.1|DT649607
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|211086755|gb|FL006907.1|FL006907
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|6918604|gb|AW400134.1|AW400134
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCCCGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|211467054|gb|FL315144.1|FL315144
EST:     AGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACANGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTC
genomic: AGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACA-GAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTC
EST: gi|5525423|gb|AI861316.1|AI861316
EST:     TTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: TTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|5706266|gb|AI942042.1|AI942042
EST:     CAGTTTGTGTAAAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAAAG                         GTAACTCCCGAGGATTTCAATGAAGGG
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGG
EST: gi|30306997|gb|CD001670.1|CD001670
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|67010865|gb|CO439614.1|CO439614
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCCAG-CGAAGAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCC-AGGCGAAGAA
EST: gi|5688622|gb|AI941637.1|AI941637
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|21626144|gb|BQ621065.1|BQ621065
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60353805|gb|DN220778.1|DN220778
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|76288310|gb|DV027878.1|DV027878
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCCCGAGGATTTCAATGAAGGGATGGTACAGGTCCAGGGGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|31558076|gb|CD527288.1|CD527288
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|22473394|gb|BU037874.1|BU037874
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCCGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|32802221|gb|CD954457.1|CD954457
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|60397276|gb|DN230092.1|DN230092
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|37382500|gb|CF628198.1|CF628198
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149085415|gb|EE174921.2|EE174921
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGGGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
EST: gi|149100562|gb|EE186647.2|EE186647
EST:     CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAG                         GTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA
genomic: CAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 288

TGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 292

TGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 299

TGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 218

TGAAGAATTGGCTCGCTCAACTGATGACTTCAACGGAGCACAGCTAAAGGCAGTTTGTGTAGAAGCTGGTATGCTTGCCCTACGGCGGGATGCTACAGAGgtgagccttc ... gattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttgtttttttttatgattgtgatttcttatcctgatgtttgattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA
        tttttttttatgattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagccttcctctcctccatatgcacagttccattatatttgctttgcgaacgtggtagcgccacaattcctaaagtaaatgttacattgatagatatggaggttgccgtctgtaggttgattattgacttgtttatttctttgtttttttttatgattgtgatttcttatcctgatgtttgattgcacagGTAACTCACGAGGATTTCAATGAAGGGATCGTACAGGTCCAGGCGAAGAAAAAGTCAAGCTTGAACTACTATGCTTAAGCTGTTTGTCAAAACATATGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT