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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcactggctatatctcttgtcaacttgttgcacacttgttcatgtggtaccgtgcacactcattttattatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA

Basic information

species Zea mays
transcript GRMZM2G032351_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g23890.4 (Oryza sativa), 3'ss of exon 8
-------------------------gtactcactggctatatctcttgtcaacttgttgcacacttgttcatgtggt-accgtgca-cactcattttattatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
                          ||||| |  |   | |      |  | || ||    | | ||   | || | ||        | | |||  |  || || |  || |||| |||||||||||||||||||| || ||| | |||||||| || |||||||||||||| ||||| || || || ||||| |||||  |||| ||||| |
gtatctgaaaaatctgtgccaaatgctactcccaagtattttggagcttgcaatttttaactagtagtgggtatgattactacatggtagtgattgcac-atctgtgagtgcagGGGGAGCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCA

upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 8
-----------------------------------------gtactcactggctatatctcttgt-caacttgttgcacacttgttcatgtggtaccgtgcacactcattttattatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
                                           |   ||   | |||||| ||   |||    |||    |       | | ||  |        |   |  || |||||  ||| ||||| || ||||||||||||||||| |||||| | |||||||| || ||||| |||||| | |  || || || |||||||  ||||| | |||||||||||
gtgaatgtgatactgttatggtagaaaacaattaatctgaatcatgaacattcaatatctattaaacaatacattgtgttcccccctttttagtttctaatgt-ttttctcaatgatttg--tatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA

upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
--------------------------------------gtactcactggctatatctcttgtcaacttgttgcacacttgttcatgtggtaccgtgcacactcatttt--attatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
                                      | ||  |     |  || |||  | ||||   |     |||   |   |  ||   |  |   | ||| |  || |||||  ||| ||||| || ||||||||||||||||| |||||| | |||||||| || ||||| |||||| | |  || || || |||||||  ||||| | |||||||||||
gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttg--tatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA

upper sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtactcactggctatatctcttgtcaacttgttgcac-------acttgttcatgtggtaccgtgcacactcatttt---attatttgggtat----gtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
            |||| | |   |||| |||||       | ||| |        |  | || |||  | | | | |    | | |||   | | |   | |||    |||||| || ||||||||||||||||| || ||||| |||||||| || ||| | ||||||||  | || || || || ||| | ||||| | |||||||||||
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71434885|gb|DR815935.1|DR815935
EST:     GGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCAATGCGAGACCAGAAA                         GGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTT
genomic: GGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCAATGCGAGACCAGAAAgtactcactg ... gggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTT
EST: gi|32850736|gb|CD990417.1|CD990417
EST:     GGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCAATGCGAGACCAGAAA                         GGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTT
genomic: GGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCAATGCGAGACCAGAAAgtactcactg ... gggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacacttgttcatgtggtaccgtgcacactcattttattatttgggtatgtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
                             actcattttattattt  TA-rich tract