1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcaaccgtctcatgctgcagtgccacaattgctgaacctgattgtgtctgactgtcttctgaccattcaaaatcaattaatcaaatatcctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTA
species | Zea mays |
transcript | GRMZM2G032267_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|74241474|gb|DT649388.1|DT649388
genomic: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|32842037|gb|CD981718.1|CD981718
genomic: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: ACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|21331671|gb|BQ487052.1|BQ487052
genomic: ACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: TTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|87157723|gb|DY402512.1|DY402512
genomic: TTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|26559755|gb|CA831990.1|CA831990
genomic: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: CGACGAAGGAATCGCAGAGCTTGTACCTGNG-GTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|32840485|gb|CD980166.1|CD980166
genomic: CGACGAAGGAATCGCAGAGCTTGTACCTG-GTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: ACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|60356915|gb|DN223888.1|DN223888
genomic: ACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|78103432|gb|DV521860.1|DV521860
genomic: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGEST: gi|32842224|gb|CD981905.1|CD981905
genomic: TCGACGAAGGAATCGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
EST: ACCTGGTGTTTTGTTCATTGATGAG GTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
genomic: ACCTGGTGTTTTGTTCATTGATGAGgtatatcatt ... cctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAG
gtgtctgactgtcttctgaccattcaaaatcaattaatcaaatatcctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTA
tatcctttttc CT-rich tract
aaaatcaattaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaccgtctcatgctgcagtgccacaattgctgaacctgattgtgtctgactgtcttctgaccattcaaaatcaattaatcaaatatcctttttcagGTCCACATGTTGGATATTGAATGCTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - -gctgcag
- - - - - - - - - - - -gccacaa
- - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa