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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtccacatacttattaattttgccatttaatttgcagcctttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTG

Basic information

species Zea mays
transcript GRMZM2G031656_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031656_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g06330.1 (Oryza sativa), 3'ss of exon 7
------gtgtccacatacttattaattttgccat-------ttaatttgcagcctttttgagaaggcaata--gttactaacctcat---------gcagtatggataaactccaaacagATTCTTGGTGGTG---AGAATGGTCCAT---TAAAAGACTACTTCGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTG
         |||    | ||  ||   |  | ||        ||  ||||||| | ||  |  ||  | ||  ||| | ||||| ||         |   ||| | | ||||   ||||||| | ||||||||   ||||||| ||     | ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||      
gtatacaattcctatcattttctagcgtcacaatgaatagactagcttgcagcatattcaaagagaaattaatgttgcaaacctgatgtcattgctgtgctattggtgaactgtgaacagATACATGGTGGTGGTGAGAATGGCCCGCTTCTGAAAGATTACTTTGAAGGTGGTGCTACTTGGGCTTTTGATGTTGGCAGTCAATCTATGACATGCCCAA------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40335493|gb|CK369563.1|CK369563
EST:     GACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG                         ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
genomic: GACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
EST: gi|109637277|gb|EC590822.1|EC590822
EST:     AAGGTGTGACTAACCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG                         ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGNGGTGCG
genomic: AA-GTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
EST: gi|50326100|gb|CO521226.1|CO521226
EST:     AAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAG                         ATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG
genomic: AAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAATGAATCTAAGgtgtccacat ... ctccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgagaaggcaatagttactaacctcatgcagtatggataaactccaaacagATTCTTGGTGGTGAGAATGGTCCATTAAAAGACTACTTCGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTG
                   tactaac  putative branch site (score: 0)
             aatagtta  TA-rich tract