1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtactttgctcttctggaatagaactgaattgtggtcagatccatatactagcttgtaggttgaactagtttatttagtgatgtatctgtgatttttagggtattgtgttactctagaatactggatcacttactattttagttgcttaagtatttataattgcctgaaaatatgtttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTGCATATAACGCTTACATTTCAGCTGCTACCAGGTATGCAACTTTGGGTG
species | Zea mays |
transcript | GRMZM2G030902_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTEST: gi|19436498|gb|BM952908.1|BM952908
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
ttactattttagttgcttaagtatttataattgcctgaaaatatgtttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTGCATATAACGCTTACATTTCAGCTGCTACCAGGTATGCAACTTTGGGTG
cacttac putative branch site (score: 2)
attttagttgcttaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgctcttctggaatagaactgaattgtggtcagatccatatactagcttgtaggttgaactagtttatttagtgatgtatctgtgatttttagggtattgtgttactctagaatactggatcacttactattttagttgcttaagtatttataattgcctgaaaatatgtttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTGCATATAACGCTTACATTTCAGCTGCTACCAGGTATGCAACTTTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT