Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttcactgctctgtggatgttattacagtcttcatttcggctcagggtcacgcagattataaatatttattgacttttggtttgacattgttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTGATTATCAATGATAATGGTTGGTAAGAGCCAAGGAGTACTTGTTTAACTA

Basic information

species Zea mays
transcript GRMZM2G030072_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32939510|gb|CF044329.1|CF044329
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|9824865|gb|BE575172.1|BE575172
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|8102628|gb|AW927429.1|AW927429
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|56382319|gb|CV984988.1|CV984988
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg
EST: gi|9255042|gb|BE345510.1|BE345510
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|16926968|gb|BM080036.1|BM080036
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg
EST: gi|9255043|gb|BE345511.1|BE345511
EST:     TTAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|32929228|gb|CF034040.1|CF034040
EST:     TCAGACATCCTGATCTAATGTGATGTTATTCATTGAAAGTTCAACATTTG                         GTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGgtaagttttt ... ttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTG
EST: gi|60355320|gb|DN222293.1|DN222293
EST:     TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACATTTGGTTAG                     
genomic: TCAGACATCCTGATCTAATGTAATGTTATTCATTGAAAGTTCAACA--T--TT-Ggtaagttttt ... ttcagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcacgcagattataaatatttattgacttttggtttgacattgttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTGATTATCAATGATAATGGTTGGTAAGAGCCAAGGAGTACTTGTTTAACTA
          attataaatatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttttcactgctctgtggatgttattacagtcttcatttcggctcagggtcacgcagattataaatatttattgacttttggtttgacattgttcaggttagGTTAATAGCTTCCAGGGGGCAGAAACAGGTGACGCTGAACAATAATGCTTGATTATCAATGATAATGGTTGGTAAGAGCCAAGGAGTACTTGTTTAACTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG