Sequence
atgc intronic sequence ATGC exonic sequence...gttggtgtcttggtggtaccgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G38790.3 (Glycine max), 3'ss of exon 5
-gttggtgtcttggtggtac-cgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgatta--ttttaaatttg--tgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
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gcctggtatgtaaatgattcacatatggcttagtcactgtgttacttt-tgcttgttgattgaat--tgaaacttgaatcttattaacttttaatgttacttgcagAGTCATTCAAGGCAATAAATGATGAGGGAATGCCAAACTACCAGAGGCACTTCCTGAAGGGAAAGCTTTACATTCATTTCTCAGTGGAATTTCCTGATAC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G38790.1 (Glycine max), 3'ss of exon 5
gttggtgtcttggtggtac-cgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgatta--ttttaaatttg--tgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
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----gtatgtaaatgattcacatatggcttagtcactgtgttacttt-tgcttgttgattgaat--tgaaacttgaatcttattaacttttaatgttacttgcagAGTCATTCAAGGCAATAAATGATGAGGGAATGCCAAACTACCAGAGGCACTTCCTGAAGGGAAAGCTTTACATTCATTTCTCAGTGGAATTTCCTGATAC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA12G10150.1 (Glycine max), 3'ss of exon 5
gttggtgtcttggtggtacc-gtgtcagttgttaaccgtccaattccattc-tcatagctttg-gttctgatgtatgattatgattattttaa--atttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
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gtatgtaaatgattcacgcctgccccagtttt--gctgtgtgattaaattggtaatttcattatgtgctaagaaaattccaactttttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGCCATTCATGAAGGGGAAACTTTACATTCACTTCACTGTGGAGTTTCCAGATTC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G17930.3 (Glycine max), 3'ss of exon 5
-gttggtgtcttggtggtac-----cgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
|||| | | || | | | || || | | || | || | || || || | | | || || | || ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
gcctggtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttatttta--ttatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G38790.2 (Glycine max), 3'ss of exon 5
gttggtgtcttggtggtac-cgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgatta--ttttaaatttg--tgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC--
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----gtatgtaaatgattcacatatggcttagtcactgtgttacttt-tgcttgttgattgaat--tgaaacttgaatcttattaacttttaatgttacttgcagagTCATTCAAGGCAATAAATGATGAGGGAATGCCAAACTACCAGAGGCACTTCCTGAAGGGAAAGCTTTACATTCATTTCTCAGTGGAATTTCCTGATACCC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 5
gttggtgtcttggtggtacc-gtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
|| || | | ||| | || || | | || | || | || || || | | | || || | || ||||||||| | |||||| || || ||||| || |||||||||||||||||| | ||||||||||| ||||| ||||| |||||| | ||||||||||| || ||
gtatgtaaatgattcacacctgccccaattttgctgtgattaaattggttatttta--ttatgtgccaagaaaattctaactttgctggttatacatgcagATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGTCATTCATGAAGGGGAAGCTTTACATTCACTTCACTGTGGAGTTCCCAGATTC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv13s0073g00560.t01 (Vitis vinifera), 3'ss of exon 6
gttggtgtcttggtggtaccgtgtcagt-tgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattt-taaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
| | | | | | | | | | | || || || | || ||| | || | | | || | | | | | |||| |||||||| || || |||||||| |||||||| || |||| ||| ||||||||||| || ||||||| ||||| | ||||| ||||| |||||
-gcgatactgtaagagaataaaaatattctcctgaaatttcagctctgggctttgactttctgttttcttg-gttgtgacccttgtctatgtttccatacagACCAATTCAAGGCTATAAATGATGAAGGAATGCCCATTTACCAGAAGCCATTCATGAAGGGGAAATTGTACATTCACTTTGCAGTGGATTTCCCTGACTC
upper sequence: GRMZM2G029079_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0080g01230.t01 (Vitis vinifera), 3'ss of exon 5
gttggtgtcttggtggtaccgtgtcagttgttaaccgtccaattccattctcatagctttg--gttctgatgtatgattatgattattttaa--atttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
||| || | | | ||| || || | || | | || | || |||| | | | | || ||||||| |||||||||||||| || || || ||||| || || |||||||| ||||||| ||| ||||| |||||||| ||| ||||||||||||||| |
gttagtaatgtcatatctctatgtttctt-ttcattacatggctctctctgtgtgatttggtcatttaaatgttgactggggggtgggggagttgttaatgcagATCAGTTCAAGGCAATCAATGACGAGGGAATGCCAATATACCAGAGGCCATTCATGAGGGGGAAGCTATACATCCAGTTCAACGTGGAGTTCCCGGACAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
ttctgat putative branch site (score: 3)
tgatgtatgattatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtgtcttggtggtaccgtgtcagttgttaaccgtccaattccattctcatagctttggttctgatgtatgattatgattattttaaatttgtgcagATTCTTTCAAGGCAATCAACGATGAAGGCATGCCCATGTATCAGAGGCCCTTCATGAAGGGCAAGCTGTACATCCACTTCTCGGTGGAGTTCCCGGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
gttggtg
- - - - - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg