Sequence
atgc intronic sequence ATGC exonic sequence...gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 3'ss of exon 7
gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaa-ttctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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-gtgaacataaagaactgtttacaggttctctgtttgctacttatctcatccagtcacttttatttcatgcagcaatgctttttattttgaaaaattttagGATGGCATGAAGATGGGAAAATCATTAGGCAACACACTTGAACCAAAGGATCTGGTAAACAGATTTGGAGTAGACTCTGTTAGGTACTTCTTCTTGCGGG
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G23250.1 (Glycine max), 3'ss of exon 7
gagcaacaaatgcatgtagattcccagtcaccttttatgt-tttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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-actaaatttggcaatttttgacttagcaaagttttataaatctatttcttatatttaatttcatttcatgcagcaatgctttttattttgaaaatgttagGATGGAATGAAGATGGGCAAGTCACTAGGGAATATACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTCCTCAGAG
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G43550.1 (Glycine max), 3'ss of exon 7
--gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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atgggtcttaggaaaagctaggaaactaa--atttttataaacctgtttcttatatttaatttcatttcatgcagcaatgctttttattttgaaaatgttagGATGGCATGAAGATGGGCAAGTCACTAGGGAATACACTTGAACCAAACGATTTGGTTAATAAATTTGGGACAGATGCAGTTAGATACTTCTTTGTCAGAG
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 3'ss of exon 7
gagcaacaa-atgcatgtagattcccagtcacctttta-tgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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-aacaattatagacatgatagtgagttatcagctgttaatattttatctc-atatacctattttatttcatgcagcaatgctttttatttttaaaattttagGATGGAATGAAGATGGGAAAATCATTGGGGAATACACTTGAACCAAATGATTTGGTTCAAAGATTTGGCTCGGATGCAGTAAGATACTTTTTCCTTAGGG
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: EFJ17733 (Selaginella moellendorffii), 3'ss of exon 7
gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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-------------------------------------------gtatccatgggttcttttttttttttttgttgac----tcgttattgtgctttccagGATGGCTTGAAGATGGGAAAGTCTCTAGGCAACACAATCGAGCCACAGGAGCTGGTCTCGAGATTTGGAGTTGATTCTGTGAGATACTTCTTTCTGAACG
upper sequence: GRMZM2G029055_T01 (Zea mays), 3'ss of exon 7
lower sequence: EFJ16264 (Selaginella moellendorffii), 3'ss of exon 7
gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
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-------------------------------------------gtatccattggttctttttctttttttttttgac----tcgttgttgtgctttccagGACGGCTTGAAGATGGGAAAGTCTCTAGGCAACACAATCGAGCCACAGGAGCTGGTCTCGAGATTTGGAGTTGATTCTGTAAGATACTTCTTTCTGAACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32942377|gb|CF047196.1|CF047196EST: CTGATACAGTTTTTGGTCATGGATTCTTGACTAAG GATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGAT
genomic: CTGATACAGTTTTTGGTCATGGATTCTTGACTAAGgtgatcttac ... aaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
aatgatttctattttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagcaacaaatgcatgtagattcccagtcaccttttatgttttatctccgcaagtcgcttttatttcatgcaccaatgatttctattttgaaaattctagGATGGCATGAAGATGGGAAAGTCACTAGGCAACACACTTGAACCAAAAGATCTGGTAGAAAGATTTGGTGCTGATGCTGTTAGGTATTTCTTCTTGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT