1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggcaacgctgaagtatcctaagaaatccatttcttgcattcgctgttcaaaatacagctgcgatggttgttttgacctccaccgtttcattccttttcagGCTGTTTGAGGCCCAACTCCTCCAGTTTCTTGGTTCAGGTGCTGTTTTAGTTTTTTTTTGGTTCAGGTGCTGCTGGTTGGCCATGACGCACGCAGAGCAG
species | Zea mays |
transcript | GRMZM2G028834_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGACTACTTCAGCATCAAGATGTAGATAAAGAACACCAGACTAATCCGAG GCTGTTTGAGGCCCAAC
genomic: CGACTACTTCAGCATCAAGATGTAGATAAAGAACACCAGACTAACCCGAGgtgatacttc ... tccttttcagGCTGTTTGAGGCCCAAC
ttcaaaatacagctgcgatggttgttttgacctccaccgtttcattccttttcagGCTGTTTGAGGCCCAACTCCTCCAGTTTCTTGGTTCAGGTGCTGTTTTAGTTTTTTTTTGGTTCAGGTGCTGCTGGTTGGCCATGACGCACGCAGAGCAG
ttttgac putative branch site (score: 40)
cctccaccgtttcatt CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaacgctgaagtatcctaagaaatccatttcttgcattcgctgttcaaaatacagctgcgatggttgttttgacctccaccgtttcattccttttcagGCTGTTTGAGGCCCAACTCCTCCAGTTTCTTGGTTCAGGTGCTGTTTTAGTTTTTTTTTGGTTCAGGTGCTGCTGGTTGGCCATGACGCACGCAGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - gctgaag
- - - - - - - - -ctaagaaa
- - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - -gctgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg