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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatctgaagactagctctaagttgttcagtatttattgctttttgctcaacttgttgaactagcaaccatttttacttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG

Basic information

species Zea mays
transcript GRMZM2G026900_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026900_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g33230.1 (Oryza sativa), 3'ss of exon 7
gtagaatctgaagactagctctaagttgttca---------gtatttat--tgctttttgctcaacttgttgaac-tagcaa-ccatttttacttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG
|||||   ||||   || | ||||||| ||||          |||||||  ||| | ||| |  | ||||      || |||     ||||| || | ||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||| || || ||||||||||||||||||||  ||||||||||
gtaga---tgaaatataacactaagttattcatgatgtaatatatttattatgcatgttgttacatttgtaagttgtaacaagttgattttatttttgcagAACCTAACCCGCACATGGGGCATCTTGCATGGGCTGATGCTTTTGTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG

upper sequence: GRMZM2G026900_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 3'ss of exon 7
gtagaatctgaagactag-ctctaagttgttcagtatttattgctttttgctcaacttgttgaactagcaaccatttttact-----tctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG
|||   |  |  || | |  ||| | |   | | ||         |    |   |  || | | |||      || ||   |     |||| |||||| || || |||||||||||||| || |||||||||||||||||  | |||||||| ||  | |||||| ||||||||||  | ||||||||
gtaatcttagtcgatttgattctgaatgaatgaataaaatggaactaaaccatgatatgatcatctaatttatatgttgtgtgataatctatagAACCAAATCCACACATGGGACATCTAGCTTGGGCTGATGCTTTTGTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGG

upper sequence: GRMZM2G026900_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ17946 (Selaginella moellendorffii), 3'ss of exon 8
gtagaatctgaagactagctctaagttgttcagtatttattgctttttgctcaacttgttgaactagcaaccatttttacttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG
                          ||| |  | |     ||| ||| |     ||| | | ||||||     |     |    |||  || || || ||| ||||||| ||||| ||||  ||||| |||||| | |||||||||||||| || ||||| || |||||  ||||||||||
-------------------gtagcactgtcccatttgcgaagctctttacg----ttgataatctagcagttgct----gtctagcagGTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCGATCAGCATGTTGAGCGAGGCGTGTAGCACAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76014611|gb|DT941781.1|DT941781
EST:     ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAG                         AACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA
genomic: ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAGgtagaatctg ... acttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA
EST: gi|32929458|gb|CF034270.1|CF034270
EST:     ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAG                         AACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA
genomic: ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAGgtagaatctg ... acttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA
EST: gi|211458184|gb|FL467236.1|FL467236
EST:     ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAG                         AACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA
genomic: ATTTAAAGAATTTGCTGGACATCCCAAGGTCTATATTTGGAATGGTGAAGgtagaatctg ... acttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttattgctttttgctcaacttgttgaactagcaaccatttttacttctacagAACCTAACCCTCACATGGGACATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCGATAAGTATGTTAAGTGAGGCAGGTAGCACAGG
                                     ccatttttacttct  CT-rich tract
                                       atttttactt  TA-rich tract