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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcatgtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaaatgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGCTTGTGCTACCTTATGTGTGACCAACCTGATGCGGCCCTCCGTGATGCAA

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 8
gtgggcatgtgcttcttgttcatgaaaagctatttaaaagtgctcccccgccccccagatatatcactcaaatgtagctgtagagagcggggtaatttggtttattttatttacctacctacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGCTTGTGCTACCTTATGTGTGACCAACCTGATGCGGCCCTCCGTGATGCAA
                      |   | ||| | |     |  | |  |     |  || |     ||  |||||     |  | |         |||  | || || ||| | |   || |       || |    |     |||  | |||  |   ||  ||||| |||||||||| |||||||||| ||||||||| || |||||||  |||||||| ||||||||| ||||||||||||||||||||||||| || ||| | || ||||
---------------------gtaggaggctgtat-----tatttcttctttatcatgagac----cttcaatgt-----tctaaaattaccacttttcatgtagttcattcatcc-tctgctcgttatcattttccttc--ttgaaacatctg-catggttattgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCTTGTGCCACCTTATGTGTGACCAACCTGATGCTGCACTCAGGGACGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149098699|gb|EE184711.2|EE184711
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|32944385|gb|CF049204.1|CF049204
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|32846920|gb|CD986601.1|CD986601
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAAACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
EST: gi|60395071|gb|DN227940.1|DN227940
EST:     CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAG                         TTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC
genomic: CTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCGATTGCTATACTCAGgtgggcatgt ... tgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaatgggacactccaatgtagctgattcttctttccccgtgtttgttgcacagTTTGTCGATGTGGGGATAATGGTGTCACCGACTGTATTCGCCAGACGAAGCTTGTGCTACCTTATGTGTGACCAACCTGATGCGGCCCTCCGTGATGCAA
                     agctgat  putative branch site (score: 4)
                           ttcttctttccccgtg  CT-rich tract