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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaatatattcgtatggtgatatttaaagatgatgcaattttgttaccttattcgtgagatttcaaactattctgatgtaaaatattgttttctcacagTTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCA

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 3'ss of exon 7
-------aaaaatatattcgtatggtgatatttaaagatgatgcaattttgttaccttattcgtgagatttcaaactattctgatgtaaaatattgttttctcacagTTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCA
       ||||    |||   |   ||  ||   |  |  ||||||||||  |  |   ||  | | ||    || ||   | ||   |     ||||   |  ||||| ||||| |||||||| ||||||||||| ||||| ||||| || ||||| |||||||||||||| || 
ttcggcaaaaaccgaattgtcaacatgcgatagtataaacatgcaattttcct--caagtttattacatgatcaagtagcttaataaga-----tgttcaattgcagTTCAACTATAGCAGTGGGCAGCCAGCACCAGAGACAATTACCGACCAAATATATGGAAACACACTTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028761|gb|BE238801.1|BE238801
EST:     GAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAG                         TTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATT
genomic: GAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAGgtgtgctagg ... tttctcacagTTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATT
EST: gi|32943498|gb|CF048317.1|CF048317
EST:     TGAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAG                         TTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATT
genomic: TGAGTGCAAGCCATAATCCAGGTGGACCAGACAATGACTGGGGTATTAAGgtgtgctagg ... tttctcacagTTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccttattcgtgagatttcaaactattctgatgtaaaatattgttttctcacagTTTAACTACAGCAGTGGACAGCCAGCACCGGAGACGATTACTGATCAAATTTATGGAAACACACTATCA
                          ttctgat  putative branch site (score: 3)
                                         ttgttttctc  putative PPT
                               atgtaaaatattgttt  TA-rich tract