1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aacttaagtttcaacttggcacctcatgatattttgtttacagtgtgatggccgtatcatctaaactttgtgttgtcatttcctatttacactacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCACGGCTTTTGATCGCAAAGGACATATTCGGAAGCTATGCATTGTGTTTCT
species | Zea mays |
transcript | GRMZM2G024615_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|40287149|gb|CK327541.1|CK327541
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCATgtaagtaatg ... actacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGTGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT GGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCAEST: gi|78083130|gb|DV511523.1|DV511523
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCATgtaagtaatg ... actacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCA
EST: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT GTTCTTTTGCTGGTCTACGCTTCCTTGCGTGGTACTTAGCTGGGAAACT
genomic: GAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCATgtaagtaatg ... actacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACT
tgatggccgtatcatctaaactttgtgttgtcatttcctatttacactacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCACGGCTTTTGATCGCAAAGGACATATTCGGAAGCTATGCATTGTGTTTCT
atctaaa putative branch site (score: 41)
ctacctc putative PPT
taaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttaagtttcaacttggcacctcatgatattttgtttacagtgtgatggccgtatcatctaaactttgtgttgtcatttcctatttacactacctcagGGTCTTTTGCTGGTCTAGGCTTCCTTGCATGGTACTTAGCTGGGAAACTCACGGCTTTTGATCGCAAAGGACATATTCGGAAGCTATGCATTGTGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - gcacctc
- - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg