1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggctgtgaacaaatttttttgggaacaagcacaagtaacttttctggtttggcaaaagatgattaacattcttcccttttacctggtttcattcagGTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCGCAGAATCTCAGACTGAG
species | Zea mays |
transcript | GRMZM2G024530_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGATGAAATCATTGATCATGTGAAATTTCTTCAGCTTCAGGTCAAG GTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCEST: gi|6536575|gb|AW224888.1|AW224888
genomic: TGCTGGATGAAATCATTGATCATGTGAAATTTCTTCAGCTTCAGGTCAAGgtatggctgt ... tttcattcagGTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTC
EST: TGCTGGATGAAATCATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTGTTGAGCATGAGTAGGCTAGGAGCTCCCGGAGCAGTTCTTCCCCTTCTC
genomic: TGCTGGATGAAATCATTGATCATGTGAAATTTCTTCAGCTTCAGGTCAAGgtatggctgt ... tttcattcagGTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTC
ttctggtttggcaaaagatgattaacattcttcccttttacctggtttcattcagGTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCGCAGAATCTCAGACTGAG
gattaac putative branch site (score: 62)
ttcttcccttttacct CT-rich tract
attaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctgtgaacaaatttttttgggaacaagcacaagtaacttttctggtttggcaaaagatgattaacattcttcccttttacctggtttcattcagGTGTTAAGCATGAGTAGGCTAGGAGCTCCAGGAGCAGTTCTTCCCCTTCTCGCAGAATCTCAGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG