1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcaattgattccttgttcatccttctgtattgtggttccttgtccatccgctcatgtttatttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGATAGTGAAGCTCGCGGAGAGTGGTGCCTTCAATCTCCAAAACACCATAT
species | Zea mays |
transcript | GRMZM2G024303_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|149101664|gb|EE187798.2|EE187798
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCTTCAGEST: gi|8367688|gb|BE050633.1|BE050633
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCCAGGCAAGACCTTCCTCAGEST: gi|149001207|gb|EE038478.2|EE038478
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|38688326|gb|CK145357.1|CK145357
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|71312652|gb|DR792844.1|DR792844
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|149076497|gb|EE165123.2|EE165123
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCCAGGCAAGACCTTCCTCAGEST: gi|113844883|gb|DW955939.1|DW955939
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|113630127|gb|DW787862.1|DW787862
genomic: CGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CGAACGTAATGGGAGAGGTTGATATAAAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|60340906|gb|DN207879.1|DN207879
genomic: CGAACGTAATGGGAGAGGTTGATAT--AACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|148962894|gb|EE013828.2|EE013828
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|113686780|gb|DW841927.1|DW841927
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: GTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGEST: gi|71759582|gb|DR957519.1|DR957519
genomic: GTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
EST: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAG GTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
genomic: CAACGAACGTAATGGGAGAGGTTGATATAACCCGTCTTGTCCGACGACAGgtatgcaatt ... ttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAG
tcatccttctgtattgtggttccttgtccatccgctcatgtttatttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGATAGTGAAGCTCGCGGAGAGTGGTGCCTTCAATCTCCAAAACACCATAT
tttattt CT-rich tract
atgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaattgattccttgttcatccttctgtattgtggttccttgtccatccgctcatgtttatttggaaccagGTGAAAATCATTGGCTCATATGGCGCAAGGGCTAGGCAAGACCTTCCTCAGATAGTGAAGCTCGCGGAGAGTGGTGCCTTCAATCTCCAAAACACCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC