Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcgtgaaaccccccctgtttgaaggctgcttttgcaatccaccgatgtttactgacacccctaagatacttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT

Basic information

species Zea mays
transcript GRMZM2G023715_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023715_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g21230.1 (Oryza sativa), 3'ss of exon 7
gtgagctcgtgaaaccccccctgtttgaaggctgcttttgcaatccacc----gatgtttactgacacccctaagatacttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT
|| || || |||   ||  | | |||||    |   || ||||| || |     | ||  ||| ||||   || ||   |||| ||||||| || |||||||||| |||||| || |||||||| |||||||||||| |||||| |||||| ||||||||
gtaagttcctgacctcctgcttctttga---ttcagttggcaattcagctaaaaaggtgaactaacacgt-taggagttttgatgcagGCTTTTTGATGGAAACAAATTCACTGGTAATATCCCAGACTCTCTTGGGCTTGTTACTACACTTGAAGTTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933999|gb|EC878000.2|EC878000
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
EST: gi|76291830|gb|DV031398.1|DV031398
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
EST: gi|148981984|gb|EE028044.2|EE028044
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTTGGGT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTT-GGGT
EST: gi|71768120|gb|DR966057.1|DR966057
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
EST: gi|148981983|gb|EE028043.2|EE028043
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT
EST: gi|76291831|gb|DV031399.1|DV031399
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGAAATATCC-GGACTCTCTTGGGT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAA-TATCCCGGACTCTCTTGGGT
EST: gi|71768121|gb|DR966058.1|DR966058
EST:     GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTT                         GCTCTTCGATGGAAACAGATTCACCGGGGATATCCCGGACTCTCTTGGGTT
genomic: GGTCCGATCCCCGACGCTCTCTTCAGCCCGGAGATGGCCTTGATCCACTTgtgagctcgt ... cttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgcttttgcaatccaccgatgtttactgacacccctaagatacttgacgcagGCTCTTCGATGGAAACAGATTCACCGGGAATATCCCGGACTCTCTTGGGTTTGTTAGTACACTCGAAGTTGT
                     atgttta  TA-rich tract