1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacggtataaattatcgatgtcgctactgcaccaggcgcgcatatgccatccacaattttttttcctgatttgatgtttgtgtttacttgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACATTCTTTTTCCTTCCCCTGGGTCTGGAGGGAAGATATTTTGTACAATGAT
species | Zea mays |
transcript | GRMZM2G022793_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACAEST: gi|78078650|gb|DV507062.1|DV507062
genomic: CCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
EST: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACAEST: gi|30052334|gb|AI065623.2|AI065623
genomic: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
EST: GAAACAATTTTATTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACAATACAEST: gi|78078651|gb|DV507063.1|DV507063
genomic: GAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
EST: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACAEST: gi|93012085|gb|EB637605.1|EB637605
genomic: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
EST: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTACTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACAEST: gi|31352699|gb|CD437056.1|CD437056
genomic: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
EST: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAG GAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
genomic: CGTAGCACCAAAAGTAGCACGATTTTGAAACAATTTTATTTTTCACAAAGgtaacggtat ... tgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACA
atgccatccacaattttttttcctgatttgatgtttgtgtttacttgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACATTCTTTTTCCTTCCCCTGGGTCTGGAGGGAAGATATTTTGTACAATGAT
tttactt CT-rich tract
acaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacggtataaattatcgatgtcgctactgcaccaggcgcgcatatgccatccacaattttttttcctgatttgatgtttgtgtttacttgtgatccagGAGAATTGTGCTCTCTTTCGTTGGGTTGGCCAGCTCTCCTTGGACTATACATTCTTTTTCCTTCCCCTGGGTCTGGAGGGAAGATATTTTGTACAATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA