1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acccaccaatccgacgtaaacgaacaaggccttaataatttggtttccgtatggttagtggtttctcattccacacctctgcttctccgcatcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTTGCCAGTTTTCGTGGGGGTGCAGGAAAGAGCTAGAGCCTTGTTGCCGCA
species | Zea mays |
transcript | GRMZM2G021742_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTTEST: gi|91053554|gb|EB163972.1|EB163972
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|50326107|gb|CO521233.1|CO521233
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTTEST: gi|71446950|gb|DR828000.1|DR828000
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTTTGAGTTAGGTTEST: gi|60356065|gb|DN223038.1|DN223038
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|76918345|gb|DV167252.1|DV167252
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGEST: gi|113701906|gb|EE679410.1|EE679410
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTG
EST: CTGATGGGCAGAAACAAGGCGAAGGAAGCACAAGCACCCCAATTCAGGAG GATTGAAGGCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTTTAGGEST: gi|211242314|gb|FL469535.1|FL469535
genomic: CTGATGGGCAGAAACAAGGCGAAGGAAGCAC---C-CC--AATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTT--AGG
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|71317917|gb|DR795718.1|DR795718
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|211124519|gb|FL463077.1|FL463077
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: CTGATGGGCAGAAACAAGGCGAAGGAAGCACAAGCACCCCAATTCAGGAG GATTGAAGGCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTTTAGGEST: gi|60356070|gb|DN223043.1|DN223043
genomic: CTGATGGGCAGAAACAAGGCGAAGGAAGCAC---C-CC--AATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTT--AGG
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|31364112|gb|CD448467.1|CD448467
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCACTGTCTGAGTTAGGTTEST: gi|71317919|gb|DR795719.1|DR795719
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|5650116|gb|AI920476.1|AI920476
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGACGAAGGAAGCACCCCAATTCAGGAG GATTGAAGGCATGCTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTEST: gi|78117951|gb|DV536338.1|DV536338
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
EST: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAG GATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
genomic: GTGAGGCTGATGGGCAGAAACAAGGCGAAGGAAGCACCCCAATTCAGGAGgtaatgaccg ... atcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTT
tccgtatggttagtggtttctcattccacacctctgcttctccgcatcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTTGCCAGTTTTCGTGGGGGTGCAGGAAAGAGCTAGAGCCTTGTTGCCGCA
cttctccgcatcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaccaatccgacgtaaacgaacaaggccttaataatttggtttccgtatggttagtggtttctcattccacacctctgcttctccgcatcctggcagGATTGAAGTCATGGTGACATGGGCTGGGTCATCCATTGTCTGAGTTAGGTTTGCCAGTTTTCGTGGGGGTGCAGGAAAGAGCTAGAGCCTTGTTGCCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT