1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgcttctgactaatagtcttttgtatggtgttccctaattttttatgcaagactgcataatttatgacttctttctttcaactttcataatcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGCTTTGGCCCA
species | Zea mays |
transcript | GRMZM2G021674_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTG ATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGCEST: gi|71774851|gb|DR972729.1|DR972729
genomic: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTGgtacgttgca ... atcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGC
EST: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTG ATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCEST: gi|78115114|gb|DV533502.1|DV533502
genomic: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTGgtacgttgca ... atcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTC
EST: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTG ATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGC
genomic: ATGAAATGGAAGACATTCAGAATAAGCTTGGTTTCGGCAGGAACTCACTGgtacgttgca ... atcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGC
atgcaagactgcataatttatgacttctttctttcaactttcataatcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGCTTTGGCCCA
tcttttc CT-rich tract
ataatttatgactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttctgactaatagtcttttgtatggtgttccctaattttttatgcaagactgcataatttatgacttctttctttcaactttcataatcttttcagATATCACTTGCAGTCCTTCTTGGTAGTGACTATTCTAATGGAGTCCATGGCTTTGGCCCA
- gcttctg
- - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gactgca