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gtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAGAATGGAGAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAAT
species | Zea mays |
transcript | GRMZM2G021270_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCTTAAAGTTCCATC-TTTTTGGTTGAGTTCATTACTCCAATCATCAAG GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAEST: gi|18963118|gb|BM660250.1|BM660250
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: CCAA-CATCAA- GCAACCAGAGG-CAAACTACGAAATCA-TTTACACAATGCCAGAGTATGAAEST: gi|31354680|gb|CD439037.1|CD439037
genomic: CCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: CATCTTTTTTGGTTGAGTTCATTACTCCAATCACTCTAG GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAEST: gi|18655210|gb|BM500015.1|BM500015
genomic: CATCTTTTTTGGTTGAGTTCATTACTCCAATCA-TCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGA
EST: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAEST: gi|18662206|gb|BM501800.1|BM501800
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAEST: gi|18661837|gb|BM501604.1|BM501604
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
EST: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAG GCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
genomic: TTCTTAAAGTTCCATCTTTTTTGGTTGAGTTCATTACTCCAATCATCAAGgtagattact ... acttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAA
gtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAGAATGGAGAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAAT
ttttgac putative branch site (score: 3)
ttcactt putative PPT
ttttttgtaaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattactgtacgattttatctattgacatatttttatgtattttcaaattttattcttgatagtataccattttgcaccaaagggatttccccctgctagatatgtattttttttgtaaacaatttgttttgactgccatgatggattcacttgtctagGCAACCAGAGGTCAAACTACGAAATCATTTTACACAATGCCAGAGTATGAAGAATGGAGAAAGAATTTAGGAGCAAGTGCAAGTTCGTGGACTATAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG