1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggaaaatttgttagaacatatttttggttgttacttcttagttagggcatcttatgctagtatcatgtttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCTTGCAAAGCGTGCACTACAGCATTTTCTAGAAAGAAGACGGCGGCATGAA
species | Zea mays |
transcript | GRMZM2G020574_T08 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCAAAGAGCATTGATCAACTTATTTGTGA-TCTTGGGGAAATGGGCCAA GTTATACCGAAEST: gi|18659370|gb|BM500302.1|BM500302
genomic: ATCAAAGAGCATTGATCAACTTATT-GTGAATCTTGGG-AAATGGGCCAAgtaggaaaat ... tttgtggcagGTTATACCGAA
EST: TTGTGAATCTTGGGAAATGGGCCAA GTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGNGTCTTCCTTCTEST: gi|149088920|gb|EE178061.2|EE178061
genomic: TTGTGAATCTTGGGAAATGGGCCAAgtaggaaaat ... tttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCT
EST: TCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGGAATGGGCCAA GTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTEST: gi|148956593|gb|EC902440.2|EC902440
genomic: TCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGAAATGGGCCAAgtaggaaaat ... tttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTT
EST: TCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGAAATGGGCCAA GTTATACCGGAAT-GCTTCCATGGGTTTTGCA-CATTTTGGTGTCTTCCTTEST: gi|71762996|gb|DR960933.1|DR960933
genomic: TCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGAAATGGGCCAAgtaggaaaat ... tttgtggcagGTTATACCG-AATTGCTTCCATGGGTTTTGCAACATTT-GGTGTCTTCCTT
EST: AAGAGCATTGATC-ACTTTATTGTGAATCTTGGGAAATGGGCCAA GTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCT
genomic: AAGAGCATTGATCAAC-TTATTGTGAATCTTGGGAAATGGGCCAAgtaggaaaat ... tttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCT
tttggttgttacttcttagttagggcatcttatgctagtatcatgtttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCTTGCAAAGCGTGCACTACAGCATTTTCTAGAAAGAAGACGGCGGCATGAA
ttagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaaatttgttagaacatatttttggttgttacttcttagttagggcatcttatgctagtatcatgtttgtggcagGTTATACCGAATTGCTTCCATGGGTTTTGCAACATTTGGTGTCTTCCTTCTTGCAAAGCGTGCACTACAGCATTTTCTAGAAAGAAGACGGCGGCATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG