1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actttggggatgcccccgttccccatttgttgcctctcgtctttttatcagttttcttcattggtcatttaaccaatatggtttattgtcccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATGACTACATGAAGTTCTTTGATGGTCTTCCTGCTTAGATGTTTATTATCT
species | Zea mays |
transcript | GRMZM2G020446_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|76928256|gb|DV171541.1|DV171541
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTCCAACCTGAAGTTGAGGCCCCCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|13515636|gb|BG517912.1|BG517912
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|78123739|gb|DV542123.1|DV542123
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|13515648|gb|BG517924.1|BG517924
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|211076903|gb|FL402120.1|FL402120
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTAGAAGCGGACGGTTCGATCGTAAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|148934358|gb|EC878387.2|EC878387
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATEST: gi|50329918|gb|CO525044.1|CO525044
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
EST: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGG GTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
genomic: TGAGCATGGCTTCCACCTACAACCTGAAGTTGAGGCCACCGGAATACTGGgtacacacta ... ccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGAT
tatcagttttcttcattggtcatttaaccaatatggtttattgtcccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATGACTACATGAAGTTCTTTGATGGTCTTCCTGCTTAGATGTTTATTATCT
atttaac putative branch site (score: 36)
tttattgtccccttt putative PPT
tcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttggggatgcccccgttccccatttgttgcctctcgtctttttatcagttttcttcattggtcatttaaccaatatggtttattgtcccctttgcagGTGGAAGCGGACGGTTCGATCGTTAAGATCAGGCATGGAGAGAAGCTTGATGACTACATGAAGTTCTTTGATGGTCTTCCTGCTTAGATGTTTATTATCT
- - - -ggatgcc
- - - - - - - - - - - - - -tgttgcc