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...acttggaaatgcaacaaagttgattgcgatggttactcttcattatacatcttatttgtataatattgactgcctgctgctgccatttaatatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAATCCTTTGCTGAGAAACTTAGTGAG
species | Zea mays |
transcript | GRMZM2G020040_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAG CTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAAEST: gi|32859585|gb|CD999266.1|CD999266
genomic: AAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAGgtatattttc ... tatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAG CTGGAAGAAAGCACAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAAEST: gi|26557797|gb|CA830032.1|CA830032
genomic: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAGgtatattttc ... tatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAG CTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAAEST: gi|116828779|gb|EC861048.1|EC861048
genomic: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAGgtatattttc ... tatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAG CTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAA
genomic: CTGAACTTAAGAATAACCTAGAGTCATACATATATTCTATGAAGGAGAAGgtatattttc ... tatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAA
tacatcttatttgtataatattgactgcctgctgctgccatttaatatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAATCCTTTGCTGAGAAACTTAGTGAG
ttatttgtataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggaaatgcaacaaagttgattgcgatggttactcttcattatacatcttatttgtataatattgactgcctgctgctgccatttaatatataacagCTGGAAGAAAGCGCAGATATTTTGACTGTCTCAACTGAACAGGAGAGGGAATCCTTTGCTGAGAAACTTAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - -caacaaa
- - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg