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...tcagattttcattttttgcaatgtttttttataccgagtatttttttttccaattctaagttgtgacatttttcttgtctgtgctgtgcataaaaaccagGTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTG
species | Zea mays |
transcript | GRMZM2G019986_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTGCGCTGAEST: gi|148991365|gb|EE032856.2|EE032856
genomic: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtacaatctt ... taaaaaccagGTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTGCGCTGA
EST: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTEST: gi|78112754|gb|DV531148.1|DV531148
genomic: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtacaatctt ... taaaaaccagGTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCT
EST: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCGAAGGCTCCTGACGGC
genomic: TTCCATGCGTCTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtacaatctt ... taaaaaccagGTAGCGAAGGCTCCTGACGGC
ttttccaattctaagttgtgacatttttcttgtctgtgctgtgcataaaaaccagGTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTG
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagattttcattttttgcaatgtttttttataccgagtatttttttttccaattctaagttgtgacatttttcttgtctgtgctgtgcataaaaaccagGTAGCGAAGGCTCCTGACGGCAACGGTGGAGTTTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - tttcatt
- - - - - - -ttttgca
- - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgt