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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctttgaattggcttatctatatttgcatatgagccttctaaacttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGACCAGTCCCTTCTGACCC

Basic information

species Zea mays
transcript GRMZM2G019926_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019926_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g41250.1 (Oryza sativa), 3'ss of exon 8
--ttcctttgaattggcttatctatatttgcatatgagccttctaaacttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGACCAGTCCCTTCTGACCC
        |||| |||   || |  || |  | ||||   |     | ||||        || |  | | || |  |||||||    | | | |||||  ||||||||| |||||||| || ||||| || |||||||| ||||| || ||||| ||||| |||||||||||||| |||||| | ||||| || |||  | |
ttggtacatgaactggtagat-tggatgtctagatgaatgtcagttagttattctaatgttcttagacaata-tggttaactatcagtgttcattgattcagGACATGCGTTTGAAGCCCGAATATACGCAGAAAATGTGCCAAGGGGATTTCTTCCTGCTACAGGAACCTTACACCACTACAGGCCAGTTCCCTCTACCGC

upper sequence: GRMZM2G019926_T04 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G03440.1 (Glycine max), 3'ss of exon 8
-ttcctttgaattggcttatctatatttgcatatgagccttctaaacttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGA---CCAGTCCCTTCTGACCC
   |   |  |     |||     || || | | |  || || |    |   |       | |  |||||   | |    ||   ||||   |      ||| ||||| |||||||| || || |||||||||||||||| || ||||||||| || ||||| |||    |||| || || |     |||||| | ||||    
gagcacatagaaaattttactatcatgtgta-aagttccatccatctattatgtagaggccttaaagattcagtatattataactctttttgtgatggcagGTCATGCTTTTGAAGCTCGAATCTATGCTGAAAATGTTCAAAAAGGGTTTCTTCCAGCAACTGGAGTTCTACACCATTATCATGTTCCAGTCTCATCTGC---

upper sequence: GRMZM2G019926_T04 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA02G16390.1 (Glycine max), 3'ss of exon 8
-ttcctttgaattggcttatctatatttgcatatgagccttctaaacttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGA---CCAGTCCCTTCTGACCC
     | | || |   |  | ||   ||   | | |   ||| |  | | ||        | |  || ||   | |    ||   ||||   |      ||| ||||| |||||||| || || |||||||||||||||| || ||||||||| || ||||| |||    |||| || || |     |||||| | ||||    
gagtttgtcaactatttattttactattatgtgtaaag-ttccatccatctattagaggccttgaagtttcagtatattataactctttttgtgatggcagGTCATGCTTTTGAAGCTCGAATCTATGCTGAAAATGTTCAAAAAGGGTTTCTTCCAGCAACTGGAGTTCTACACCATTATCATGTTCCAGTCTCATCTGC---

upper sequence: GRMZM2G019926_T04 (Zea mays), 3'ss of exon 9
lower sequence: AT1G03090.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------ttcctttgaattggcttatctatatttg-catatgagccttctaaa-----cttatagcgccactcatccagattacttcttaactactgctttgctttgata-tagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGACCAGTCCCT-TCTGACCC
                                            ||   |   ||| |||  ||  || |      ||||   ||| | |     ||| | ||   |   |  | ||  |    | | | ||   | |   ||  |   ||| ||||| ||||| ||  |||||||||||||||| ||||||| ||| ||||| |||||||| ||   | |  |||| || || || ||  |  ||| ||| 
gtatggctcttcctcctaaaaataaatggaaaatagtggtttggtttactctcattcgctattccgtactgaatccatgatttttcaagatgttacttgtggcagaaaaaaatctgaacaaca-tgacccacatatgtatcttcttggcagGTCATGCCTTTGAGGCCAGGATATATGCTGAAAACGTTCCAAAAGGATTTCTTCCTGCAACTGGGGTCCTCAATCATTATCGCCCTGTTGCAGTCTCACC-

upper sequence: GRMZM2G019926_T04 (Zea mays), 3'ss of exon 9
lower sequence: Vv07s0151g00460.t01 (Vitis vinifera), 3'ss of exon 8
ttcctttgaattggcttatctatatttgcatatgagccttc---taaacttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGACCAGTCCCTTCTGACCC
 ||  |  |||    | ||  || || |   |      |||   | |   |  |||  ||   || |       ||| ||| |  |  |||  |  |  | ||| ||||| |||||||| || |||||||||||||||||| ||| ||| ||||| || || || ||||   | ||||| || || || |||||        |
-tctatgtaatcatgtcatgaattttagagcagatttattcacatgatacttgagcttcaagaattcctggatgttcataattcttaattt--tgggtcacagGTCATGCCTTTGAAGCCCGAATATATGCTGAAAATGTTTCAAAAGGATTTCTTCCAGCCACTGGAATTCTTCATCATTATCGTCCTGTCCCAGTCTCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71438779|gb|DR819829.1|DR819829
EST:     TGCGAATGGAGAACGACTACCATTATCTCAGGAGCAGGTTCCATTAAATG                         GACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTC
genomic: TGCGAATGGAGAACGACTACCATTATCTCAGGAGCAGGTTCCATTAAATGgtaaacctta ... tttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatagcgccactcatccagattacttcttaactactgctttgctttgatatagGACATGCATTTGAAGCACGGATATATGCTGAAAATGTTCCAAGAGGGTTTCTCCCTGCAACAGGAACCTTACATCACTACCGACCAGTCCCTTCTGACCC
                                       ctttgcttt  CT-rich tract
                                             tttgatata  TA-rich tract