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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgatttgcagtgatctctttagcagaaatcttcatcaaaaagaactttagcatatatagcaaggaagtacataatttttttgacaatgtcgtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATC

Basic information

species Zea mays
transcript GRMZM2G019907_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019907_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g59350.2 (Oryza sativa), 3'ss of exon 10
ttcgatttgcagtgatctctttagca-gaaatcttcatcaaaaagaactttagcatatatagcaag--gaagtacataattt-ttttgacaatgtc--gtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATC-------------------------------------------------------
    ||   || | | |    || || |||||   |||  | |  ||  |     | | | ||||   | |     |  |    | | || ||| |   |||||||||||||||||| ||||| || || ||||| |||||||| |||||                                                        
----ataaccattaaacggaataccaagaaatagacat--agagaaatgtatatttctgttgcaaattgtaacttttggtgaactataacgatgccttatctgcagGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCACTCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32789988|gb|CD942224.1|CD942224
EST:     TGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAG                         GCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTA
genomic: TGGCGATGGCTATGGGAAAACTTGGCACCCTAGAGAACTTTCTACGACAGgtttgtcatg ... tcgtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttagcatatatagcaaggaagtacataatttttttgacaatgtcgtctgcagGCTGATAATCTACGGCTGCAAACACTTCAACAAATGCAACGCATC
                                  ttttgac  putative branch site (score: 3)
                     aagtacataatttttt  TA-rich tract