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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctagttgtcttgtggcatagttttccttcatggcctttattgtagttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC

Basic information

species Zea mays
transcript GRMZM2G019267_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019267_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 3'ss of exon 8
-ctctagttgtcttgtggcatagttttccttcatggcctttattgtagttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC
   |   ||  | |  | ||| | || | | ||  ||   |  | |    |   | |   ||  |     | |  | | |||| || ||||||| |||||||||||||| ||| |||| || || |||||||||||||| || || ||   ||||||||||||||||||||||||||| ||||||||||| ||||||||||
aaaccgtttcccctacg-cattgattacatgcactgcacattgtttgtccatgcaatagttataactcctaacctcatctgattttatgctattactgcagCCAGAGCAACTGTCTAAAATTTTTGAGCTTTGTGGTACGCCCGACGAGTTAATCTGGCCTGGTGTCACAAAAATGCCATGGTACAACAATTTCAAGCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93282558|gb|EB674822.1|EB674822
EST:     TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAG                         CCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA
genomic: TTTTTGCAGAACTTCTCAATGGGAAGCCAATATTGCCTGGAAAGAATGAGgtagattttt ... attcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttacaaactcactaacaggtgcatctccttgtgatgttttgctattcctgcagCCAGAGCAGCTGACTAAGATCTTCGAGCTTTGTGGTACCCCTGATGACACAATCTGGCCTGGTGTCACAAAAATGCCTTGGTACAACAACTTCAAGCCTC
           cactaac  putative branch site (score: 1)
                                           ctattcct  putative PPT
                                   atgtttt  TA-rich tract