1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtctatgctttcaccagaccccacacatgtgtgagcctccggaggaatttgtgtcatatcatcatttttttctacttatgtttctttgttttgtgctagCTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCAGAAGTCTGACTCTGAGAAATGCAAAGATACAT
species | Zea mays |
transcript | GRMZM2G019260_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTGGGATCATGAGAATAAACAGCTCTCATTACCTCCTCTGATGACCCTT CTCCTTGGGGAEST: gi|58029394|gb|CX724821.1|CX724821
genomic: GGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCCTTgtaagtcgtc ... tttgtgctagCTCCTTGGGGA
EST: GGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCCTT CTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGAEST: gi|78180064|gb|DV550437.1|DV550437
genomic: GGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCCTTgtaagtcgtc ... tttgtgctagCTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGA
EST: GGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTTATGACCCTT CTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGA
genomic: GGTGGGATCATGAGAATAAACAGTTCTCATTACCTCCTCTGATGACCCTTgtaagtcgtc ... tttgtgctagCTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGA
gaatttgtgtcatatcatcatttttttctacttatgtttctttgttttgtgctagCTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCAGAAGTCTGACTCTGAGAAATGCAAAGATACAT
tttttttctacttatg CT-rich tract
atatcatcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctatgctttcaccagaccccacacatgtgtgagcctccggaggaatttgtgtcatatcatcatttttttctacttatgtttctttgttttgtgctagCTCCTTGGGGAACCTGGAACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCAGAAGTCTGACTCTGAGAAATGCAAAGATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG