1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaacactgctgcatgagatgaaccgtcatggtgcaccagcaacctttcttcacaatgctttggtactgtttttttaatgtgtactctgatttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCGTTACAATCCTTTCCGGGACTTTTCTTCTTCACAAGACAAAGGATATGG
species | Zea mays |
transcript | GRMZM2G018971_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCEST: gi|149034350|gb|EE155058.2|EE155058
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
EST: GTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCEST: gi|78121963|gb|DV540347.1|DV540347
genomic: GTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
EST: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCEST: gi|74246318|gb|DT654232.1|DT654232
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
EST: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCEST: gi|71419488|gb|DR804789.1|DR804789
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
EST: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCEST: gi|78092523|gb|DV520897.1|DV520897
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
EST: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG GATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
genomic: ACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgtaacagatt ... tttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTC
tttcttcacaatgctttggtactgtttttttaatgtgtactctgatttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCGTTACAATCCTTTCCGGGACTTTTCTTCTTCACAAGACAAAGGATATGG
tactgtttttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacactgctgcatgagatgaaccgtcatggtgcaccagcaacctttcttcacaatgctttggtactgtttttttaatgtgtactctgatttcatacagGATTGGGATCGTCAAAATCCAACGCAAATTGTTACAGAGATGTGTGGCTTCGTTACAATCCTTTCCGGGACTTTTCTTCTTCACAAGACAAAGGATATGG
- - -actgctg
- - - - - - - - -gatgaac
- - - - - - - - - - - - - -catggtg
- - - - - - - - - - - - - - - - - caccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtactg