1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acattatattttattcgccaacttatatctttcactgtcctttctcttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
species | Zea mays |
transcript | GRMZM2G018946_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCCTCA-CCAAATCAA TTTTCAGCTTACCCAGGTACEST: gi|78091532|gb|DV519906.1|DV519906
genomic: TGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCC-TCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTAC
EST: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGEST: gi|71442030|gb|DR823080.1|DR823080
genomic: CTGGTGGAGCTAGAGAACAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATG
EST: TGGTGGAGCTAGAGAAACAGCA-GTTCACTTTACTCCTCAACCAAATCAA TTTTCAGCTTACCCANGTACAGGTGGTCAT
genomic: TGGTGGAGCTAGAGAA-CAGCAAGTTCACTTTACTCCTCAACCAAATCAAgtaagaaacc ... tttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCAT
cttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
cgattttttttttc CT-rich tract
attttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattatattttattcgccaacttatatctttcactgtcctttctcttgggtaagtatgtttacctcttgtaactgattggttgcgattttttttttcagTTTTCAGCTTACCCAGGTACAGGTGGTCATCAGCACGATCTGCAGAGTATGGTTTTGGAGGTTATGCAACGACCAGATATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG