1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttttcttctttttgactaccattttttttagtttcttaggcagtatcaaatttggataaccatataagaattttcagctggtttttaattttatatgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG
species | Zea mays |
transcript | GRMZM2G018697_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|22490622|gb|BU050545.1|BU050545
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|61118430|gb|DN559391.1|DN559391
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTAGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|87152471|gb|DY397260.1|DY397260
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|13126372|gb|BG316942.1|BG316942
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGCAGCTTGTACCTGGTGTEST: gi|93284661|gb|EB676925.1|EB676925
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAG-AGCTTGTACCTGGTGT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCEST: gi|61118429|gb|DN559390.1|DN559390
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGC
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTAGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|31612366|gb|CD568988.1|CD568988
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTEST: gi|213174323|gb|FM191608.1|FM191608
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
EST: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAG GTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
genomic: AACCACGAAAGACTGAAATCACCGAAAAACTACGCCAAGAAATTAATAAGgttttcttct ... atgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTT
atttggataaccatataagaattttcagctggtttttaattttatatgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG
ttttaat putative branch site (score: 3)
tttttaattttatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcttctttttgactaccattttttttagtttcttaggcagtatcaaatttggataaccatataagaattttcagctggtttttaattttatatgatgacagGTGGTAAATAGATATATCGATGAAGGAATTGCAGAGCTTGTACCTGGTGTTTTGTTCATTGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT