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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcctgttgacgctgactactaaataaccaataaaaaatcatctagttcttggcaactcgtcatcccagctacagaagataccatgtattgctattgcccgtttcatcgttaatttgtttgcctatataatgggagttttccttgcttatattcacagGTATCCCAATCCATCCTCATTTTCGTATGAACGACGTTTTTTCTGTCCTTTTGAGTACGCTCTCCAGCCTCCTGCTTGGTATAAGCCTGAACATATAGCA

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 3'ss of exon 8
gtatgtttcctgttgacgctgactactaaataaccaataaaaaatcatctagttcttggcaactcgtcatcccagctacagaagataccatgtattgctattgcccgtttcatcgttaatttgtttgcctatataatgggagttttccttgcttatattcacagGTATCCCAATCCATCCTCATTTTCGTATGAACGACGTTTTTTCTGTCCTTTTGAGTACGCTCTCCAGCCTCCTGCTTGGTATAAGCCTGAACATATAGCA
                                                              ||   |||      ||   ||  ||    || |||   ||  || | |     ||| | |  |   | | | |   |    |||  || ||| |   ||||| ||||| ||||| || |||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||||
--------------------------------------------------------------ctttccattgttattagttaacttatacagttttggagtt-tccatattgatattagtgtactattccacaaagatgataattttgttcctttt-cccacagATATCCAAATCCGTCTTCATTTTCATATGAACGGCGTTTTTTCTGCCCTTTCGAGTATGCCCTCCAGCCTCCTGCTTGGTATAAACCTGAACATATAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcgttaatttgtttgcctatataatgggagttttccttgcttatattcacagGTATCCCAATCCATCCTCATTTTCGTATGAACGACGTTTTTTCTGTCCTTTTGAGTACGCTCTCCAGCCTCCTGCTTGGTATAAGCCTGAACATATAGCA
    cgttaat  putative branch site (score: 4)
                                 ttttccttgcttat  putative PPT
      ttaatttgttt  TA-rich tract