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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatacatttttggagcaattgacttggggtttcatgtgttggctgctaaaccatcttgtgacaatcacgcatgtgccttctgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG

Basic information

species Zea mays
transcript GRMZM2G018177_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018177_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 6
-----------------------gtatacatacatttttggagcaattgacttgggg--tttcatgtgttggctgctaaaccatcttgtgacaatcacgcatgtgccttctgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG
                        |  ||| ||| |||  ||   ||||     | |    | | | |    |||         || |  |  ||     |  ||  ||   |||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||| |||||||| || || || |||||||| ||||||
gtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattt---tgctacagGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     GATCAATGTCAGCCCTGAGGTTTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     GATCAATGTCAGCCCTGAGGTCTCCGAATCTACAAGGATCATTTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGAAAAAACTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATTTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18165625|gb|BM335464.1|BM335464
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATTTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATTTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCCGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAG-ATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAA-GAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|24765545|gb|CA400704.1|CA400704
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACGAGGATCATCTATGGAG                         GTTCAGTAACTGC
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGC
EST: gi|9731093|gb|BE509845.1|BE509845
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTGCAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|211534317|gb|FL091476.1|FL091476
EST:     TCCATGTCAGCCCCTGAG-TCTCTGAATCTACAAGGATCATTTATGGGAG                         GTTCAGTAACTGCTGCAAACTGCAAAGAGCTGGCAGCACAAGCCTGATG
genomic: TCAATGTCAGCCC-TGAGGTCTCTGAATCTACAAGGATCATCTATGG-AGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACA-GCCTGATG
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     GATCAATGTCAGCCCTGAGGTCTTTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|18172878|gb|BM348266.1|BM348266
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAG                         GTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG
genomic: GATCAATGTCAGCCCTGAGGTCTCTGAATCTACAAGGATCATCTATGGAGgtatacatac ... tgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttggctgctaaaccatcttgtgacaatcacgcatgtgccttctgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG
        tgctaaa  putative branch site (score: 2)
                                      tgccttct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatacatacatttttggagcaattgacttggggtttcatgtgttggctgctaaaccatcttgtgacaatcacgcatgtgccttctgtgctacagGTTCAGTAACTGCTGCGAACTGCAAAGAGCTGGCAGCACAGCCTGATGTCGATGGTTTCCTTGTGGGCGGTGCTTCTTTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG