1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtccttaccatgtcaatcacatggactggtgtgggtatagcttgttcctcaacgaacactatattattagctgtgattatacatataatattgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG
species | Zea mays |
transcript | GRMZM2G017853_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|74233404|gb|DT641318.1|DT641318
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|76927172|gb|DV171164.1|DV171164
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTGGAEST: gi|18177348|gb|BM378558.1|BM378558
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|71310881|gb|DR791743.1|DR791743
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|78089273|gb|DV517647.1|DV517647
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|211289510|gb|FL460651.1|FL460651
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAEST: gi|91051135|gb|EB161553.1|EB161553
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCGGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGGGGAGTGGAEST: gi|78085441|gb|DV513834.1|DV513834
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
EST: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAG GATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGAATGGGGAGTGGA
genomic: GAACTTTAGACACACGACCAGATCATATCATCAACCAGATTCATTATGAGgtacagattt ... ttgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGA
tcctcaacgaacactatattattagctgtgattatacatataatattgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG
tgattatacatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttaccatgtcaatcacatggactggtgtgggtatagcttgttcctcaacgaacactatattattagctgtgattatacatataatattgttgccagGATGCTGCCTCCCTTGCTGTAGCAATCATGAAAAAGGGACTGCGGAGTCGAATATTTCTGGGTTGTGACAACAAGCCCCTTTCCAG
- - - -ccatgtc
- - - - - - - - - -catggac
- - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt