1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctatcaactttgaggaatgaacgtatgatttaccacctcatctaggatttctcgaaccaaacacaaccttaatagtactctctgataaactcttgcagGCTGAGGACACATGCTGTAATGGAGCCGTTCATATTGGCAGCGCATCGGCGTATGAGCGCAATGCACCCAGTCTTCAAGCTCCTGCACCCCCACATGCGG
species | Zea mays |
transcript | GRMZM2G017616_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCATGTCAGCTCCAANCGACGCCGGTGTTCACCAGCTCGTTAATCACTG GCTGAGGACACATGCTEST: gi|211506485|gb|FL158294.1|FL158294
genomic: CTCATGTCAGCTCCAA-CGACGCCGGTGTTCACCAGCTCGTTAATCACTGgtatggattc ... actcttgcagGCTGAGGACACATGCT
EST: GCTCATGTCAGCTCCACCGACGCCGGTGTTCACCAGCTCGTTAATCACTG GCTGGAGGAC-CATGCT
genomic: GCTCATGTCAGCTCCAACGACGCCGGTGTTCACCAGCTCGTTAATCACTGgtatggattc ... actcttgcagGCTG-AGGACACATGCT
aggatttctcgaaccaaacacaaccttaatagtactctctgataaactcttgcagGCTGAGGACACATGCTGTAATGGAGCCGTTCATATTGGCAGCGCATCGGCGTATGAGCGCAATGCACCCAGTCTTCAAGCTCCTGCACCCCCACATGCGG
ctctgat putative branch site (score: 10)
ctcttgc putative PPT
ttaatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatcaactttgaggaatgaacgtatgatttaccacctcatctaggatttctcgaaccaaacacaaccttaatagtactctctgataaactcttgcagGCTGAGGACACATGCTGTAATGGAGCCGTTCATATTGGCAGCGCATCGGCGTATGAGCGCAATGCACCCAGTCTTCAAGCTCCTGCACCCCCACATGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - taccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cgaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaacc