1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaacaaggcctcaggtagtcgttcatttggttcaaaaagaaaatgcacttaagacgcatgagcaagtgatagatattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGCTTGTTCCTGGTCAGGCAGTTGGATCTCTCTCCATTAGG
species | Zea mays |
transcript | GRMZM2G017365_T09 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|211384669|gb|FL388814.1|FL388814
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|9953706|gb|BE640289.1|BE640289
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|32796253|gb|CD948489.1|CD948489
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: CCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAGGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|166498606|gb|EG162706.1|EG162706
genomic: CCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGEST: gi|211489499|gb|FL457182.1|FL457182
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|71442151|gb|DR823201.1|DR823201
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGEST: gi|211206137|gb|FL466217.1|FL466217
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
EST: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAG ATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
genomic: TCGCACCTAGCAATGTGCCACCTTCAGCCTTTACAAAGTGCTCGAGACAGgtaaacaagg ... tattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAG
ggttcaaaaagaaaatgcacttaagacgcatgagcaagtgatagatattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGCTTGTTCCTGGTCAGGCAGTTGGATCTCTCTCCATTAGG
tattctcc CT-rich tract
aaaaagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaaggcctcaggtagtcgttcatttggttcaaaaagaaaatgcacttaagacgcatgagcaagtgatagatattctccagATTGCTGCTTGTGAAGATGTCTCCGAAGTATGGCAAGGTCGATTCTGGGAGCTTGTTCCTGGTCAGGCAGTTGGATCTCTCTCCATTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT