Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctattttttttactattttcacgtttcctgtgcttcccatttatcatggtgacttgtggccatctgtttattccttttgtgctactacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA

Basic information

species Zea mays
transcript GRMZM2G017365_T08
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T08 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 3'ss of exon 6
gtaaaatctattttttttactattttcacg--tttcctgtgcttcccatttatcatggtgacttgtggccatctgtttattcct--------tttgtgc-tactacccgta-gGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA
              |    ||||| | |||  ||| ||||||  | |   | | | ||| |||| | ||       ||| ||||        ||| ||| |||| |   || || |||| ||||| || ||  ||||||||||||| || |||||||||||||| ||||||||||||||  | ||||| ||||||||||||||||| ||||||
-------------gtaaatctattctgacgaattttctgtgcccctctaatgttacggtcacttttagcttggcacttaatcctaaaatgactttatgcctactgcttttaagGGTTGAAAATGCGGAAGTGTTGTGCCTGGGAATTGTTTCAGTGGCAGTGTTCATGCTTGTTTTGCCACTCTTTAAGGCTACTGGTAATATCCTTCTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211206137|gb|FL466217.1|FL466217
EST:     TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|76014355|gb|DT941525.1|DT941525
EST:     -G-AGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|211384669|gb|FL388814.1|FL388814
EST:     TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|9953706|gb|BE640289.1|BE640289
EST:     TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|211489499|gb|FL457182.1|FL457182
EST:     TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
EST: gi|71442151|gb|DR823201.1|DR823201
EST:     TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGG                         GATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT
genomic: TGCAGGCTTGATACTAGCTTCTTGGTTTCTTTCATTGGGgtaaaatcta ... ctacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcatggtgacttgtggccatctgtttattccttttgtgctactacccgtagGATTGAGAATGCTGAGGTTCTGTGCCTGGGAATCGTCTCAGTGGCAGTGTTTATGCTTGTTTTGCCGTTATTTAAAGCTACTGGTAATATCCTACTGCAA
                         tgtttatt  TA-rich tract