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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccttctaatcacctacaattaagagtttgtatctactcttgaatttctgtaatgttgttcatcttttttcttttttaaaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG

Basic information

species Zea mays
transcript GRMZM2G017086_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 3'ss of exon 7
gttccttctaatcacctacaattaagagtttgtatctactcttgaatttctgtaatgttgttcatcttttttcttttttaaaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG
|||  ||    |||||||  |||||   ||    | | ||  ||  | ||||||   |  || |   || |||  ||  | ||| | ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||  ||||
gtttgtttggttcacctatgattaaattttaagtttttctactgtttatctgta---tgattaaatattgttcacttgaacaaattgcagGATGCAGAAGAATGCTGGACCCAATTGGTGTATACACTTTCTCAAACTCTTACATCAGAAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934266|gb|CF039078.1|CF039078
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATACAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32866635|gb|CF006317.1|CF006317
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|241994792|gb|GR421145.1|GR421145
EST:     AAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32932531|gb|CF037343.1|CF037343
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|211437528|gb|FK975648.1|FK975648
EST:     AAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTACATGCAACAA                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32863109|gb|CF002791.1|CF002791
EST:     NNNNNTACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAA-TACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32935100|gb|CF039912.1|CF039912
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTC
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTC
EST: gi|32930082|gb|CF034894.1|CF034894
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGGATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32945380|gb|CF050199.1|CF050199
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32911302|gb|CF016114.1|CF016114
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32932473|gb|CF037285.1|CF037285
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|74240015|gb|DT647929.1|DT647929
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|32931528|gb|CF036340.1|CF036340
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|67017287|gb|CO446036.1|CO446036
EST:     AAAAATACCCGCAATTTGCGCAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
EST: gi|33094903|gb|CF054897.1|CF054897
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACT
EST: gi|50332356|gb|CO527482.1|CO527482
EST:     AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAG                         GATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT
genomic: AAAAATACCCGCAATTTGCACAGCAGCATAATAATGTCTACATGCAACAGgttccttcta ... aaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactcttgaatttctgtaatgttgttcatcttttttcttttttaaaaaatacagGATGCAGAAGAATGCTGGACACAGTTGGTGTATACGCTTTCTCAAACTCTTACCTCAGATTCAAG
                         ttcatcttttttcttt  CT-rich tract
                 taatgttgttcatctt  TA-rich tract