1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggaaccagtatctcatcaagagctatcatggcaatattgtgagaaagccatagactcataaaatgttgaaaacaagcttgttttttcccccaaaatgcagGCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAGTCTGGCCAAGGCATATCCATACACGAG
species | Zea mays |
transcript | GRMZM2G015610_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGTCTTTGAGGATGGATGCCCATCCCTTTCGAGGAG GCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGCEST: gi|71430015|gb|DR811065.1|DR811065
genomic: AGGAGGTCTTTGAGGATGGATGCCCATCCCTTTCGAGGAGgtttgtgccc ... caaaatgcagGCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGC
EST: GATTTCGTGGAGGAGGTCTTTGAGGATGGATGCCCATCCCTTTCGAGGAG GCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGC
genomic: GATTTCGTGGAGGAGGTCTTTGAGGATGGATGCCCATCCCTTTCGAGGAGgtttgtgccc ... caaaatgcagGCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGC
agccatagactcataaaatgttgaaaacaagcttgttttttcccccaaaatgcagGCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAGTCTGGCCAAGGCATATCCATACACGAG
cttgttttttccccc CT-rich tract
ataaaatgttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaccagtatctcatcaagagctatcatggcaatattgtgagaaagccatagactcataaaatgttgaaaacaagcttgttttttcccccaaaatgcagGCTTAATTCTGAATATCCTGTCCGAGATATGTTCAAGCTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAGTCTGGCCAAGGCATATCCATACACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-gaaccag
- - - - - - - - - - - - - catggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa