1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaactggccaacatgaaatttatgctttgtgctttgcatgaacttcgagttgaagcaacaaaaaaaacctgctaacagtttatcttggtcaataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGATCTCGTCACGTGACCACGATTTTCTCTCCGATGTATAGTTAACAAGGAG
species | Zea mays |
transcript | GRMZM2G015324_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TNCAC-AGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|6227264|gb|AW155863.1|AW155863
genomic: T-CACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|74243702|gb|DT651616.1|DT651616
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|211310556|gb|FL467517.1|FL467517
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|21390513|gb|BQ528562.1|BQ528562
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|14311570|gb|BG901325.1|BG901325
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGAEST: gi|110194722|gb|EC876620.1|EC876620
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
cgagttgaagcaacaaaaaaaacctgctaacagtttatcttggtcaataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGATCTCGTCACGTGACCACGATTTTCTCTCCGATGTATAGTTAACAAGGAG
tgctaac putative branch site (score: 1)
aacaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactggccaacatgaaatttatgctttgtgctttgcatgaacttcgagttgaagcaacaaaaaaaacctgctaacagtttatcttggtcaataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGATCTCGTCACGTGACCACGATTTTCTCTCCGATGTATAGTTAACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG